Basic Information
Locus ID:
CQ.Regalona.r1.3AG0025630
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 65101833 | 65105333 | - | CQ.Regalona.r1.3AG0025630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 54,057.93 Da | 56.60 | 61.08 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 250 | 314 | 3.29976E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 22 | 107 | 1.13814E-46 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 23 | 107 | 3.9E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 250 | 317 | 4.0E-16 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 243 | 322 | 2.88E-22 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 18 | 115 | 1.83E-27 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 12 | 116 | 6.9E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 233 | 328 | 1.7E-22 | IPR036910 |
| SMART | SM00501 | bright_3 | 21 | 112 | 1.3E-24 | IPR001606 |
| SMART | SM01014 | ARID_2 | 17 | 107 | 9.5E-28 | - |
| SMART | SM00398 | hmgende2 | 249 | 318 | 4.9E-20 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 20 | 111 | 25.403498 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 250 | 317 | 15.987444 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 434 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 413 | 432 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 244 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 370 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 446 | 489 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 259 | - | - |
| Coils | Coil | Coil | 299 | 319 | - | - |
| Coils | Coil | Coil | 371 | 392 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021745861.1 | high mobility group B protein 15-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LTQ0 | High mobility group B protein 15-like OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology