Basic Information
Locus ID:
CQ.Regalona.r1.3AG0025620
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 65100291 | 65100947 | - | CQ.Regalona.r1.3AG0025620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 17,302.81 Da | 33.47 | 79.93 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 4 | 144 | 4.8016E-45 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 13 | 143 | 1.1E-37 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 2 | 149 | 3.54E-46 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 150 | 3.4E-48 | IPR016135 |
| SMART | SM00212 | ubc_7 | 4 | 149 | 8.6E-46 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 149 | 39.846489 | IPR000608 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64230.1 | ubiquitin-conjugating enzyme 28. | 0 |
| RefSeq | XP_021749151.1 | ubiquitin-conjugating enzyme E2 28-like [Chenopodium quinoa] | 0 |
| Q94F47 | Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana OX=3702 GN=UBC28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LTP9 | UBC core domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23732 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl02848, Sgl07969 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000030517 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0025620, CQ.Regalona.r1.3BG0026540 |