HalophFGD

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Basic Information
Locus ID: CQ.Regalona.r1.3AG0024140
Species & Taxonomic ID: Chenopodium quinoa & 63459
Genome Assembly: GCA_040571445.1
Description: F-box FBD LRR-repeat protein
Maps and Mapping Data
Chromosome Start End Strand ID
chr3A 63274998 63277909 + CQ.Regalona.r1.3AG0024140
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
10.28 10,564.99 Da 48.58 77.63 -0.52
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 63 93 1.0E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 60 93 5.1E-9 IPR036047
Gene3D G3DSA:1.20.1280.50 - 42 93 4.8E-6 -
ProSiteProfiles PS50181 F-box domain profile. 61 93 10.371784 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
TAIR AT2G42720.1 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein. 0
RefSeq XP_021749198.1 F-box protein At4g09920-like [Chenopodium quinoa] 0
TrEMBL A0A803LZR4 F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Amaranthaceae Chenopodium quinoa 1 CQ.Regalona.r1.3AG0024140
Poaceae Echinochloa crus-galli 12 AH04.2072, BH04.2135, BH04.2138, BH04.2139, BH04.2145 ...
CH02.2882, CH02.2897, CH04.2464, CH04.2731, CH05.2892, CH09.2705, CH09.2710
Poaceae Eleusine coracana subsp. coracana 15 gene-QOZ80_5AG0376310, gene-QOZ80_5BG0423530 ...
gene-QOZ80_9AG0671040, gene-QOZ80_9AG0690870, gene-QOZ80_9AG0690880, gene-QOZ80_9AG0690890, gene-QOZ80_9AG0690920, gene-QOZ80_9AG0690960, gene-QOZ80_9AG0691020, gene-QOZ80_9BG0715300, gene-QOZ80_9BG0717160, gene-QOZ80_9BG0717180, gene-QOZ80_9BG0717190, gene-QOZ80_9BG0717200, gene-QOZ80_9BG0717310
Poaceae Hordeum vulgare 5 HORVU.MOREX.r3.2HG0110910.1 ...
HORVU.MOREX.r3.3HG0313920.1.CDS1, HORVU.MOREX.r3.3HG0313940.1.CDS1, HORVU.MOREX.r3.3HG0313960.1.CDS1, HORVU.MOREX.r3.3HG0313970.1.CDS1
Poaceae Lolium multiflorum 32 gene-QYE76_007082, gene-QYE76_009132, gene-QYE76_009145 ...
gene-QYE76_028966, gene-QYE76_036423, gene-QYE76_036427, gene-QYE76_036428, gene-QYE76_036429, gene-QYE76_036430, gene-QYE76_038430, gene-QYE76_038432, gene-QYE76_038433, gene-QYE76_038601, gene-QYE76_038605, gene-QYE76_039894, gene-QYE76_039897, gene-QYE76_048047, gene-QYE76_049316, gene-QYE76_057696, gene-QYE76_057708, gene-QYE76_058077, gene-QYE76_058373, gene-QYE76_058394, gene-QYE76_059048, gene-QYE76_059050, gene-QYE76_060122, gene-QYE76_060933, gene-QYE76_065809, gene-QYE76_065814, gene-QYE76_065817, gene-QYE76_065822, gene-QYE76_065997
Poaceae Oryza coarctata 4 Oco07G001790, Oco07G002090, Oco21G006700, Oco22G010260
Poaceae Oryza sativa 13 LOC_Os02g28600.1, LOC_Os04g16160.1, LOC_Os05g46590.1 ...
LOC_Os08g24190.1, LOC_Os10g27400.1, LOC_Os11g33190.1, LOC_Os11g33220.1, LOC_Os11g33250.1, LOC_Os11g42230.1, LOC_Os11g42240.1, LOC_Os11g42270.1, LOC_Os11g42280.1, LOC_Os11g42300.1
Poaceae Paspalum vaginatum 7 gene-BS78_05G225600, gene-BS78_05G225700 ...
gene-BS78_05G225900, gene-BS78_09G116100, gene-BS78_09G116300, gene-BS78_10G066500, gene-BS78_10G066600
Poaceae Puccinellia tenuiflora 25 Pt_Chr0103367, Pt_Chr0103372, Pt_Chr0201689, Pt_Chr0201691 ...
Pt_Chr0201692, Pt_Chr0201698, Pt_Chr0305502, Pt_Chr0404387, Pt_Chr0500107, Pt_Chr0500134, Pt_Chr0500208, Pt_Chr0601131, Pt_Chr0601132, Pt_Chr0601137, Pt_Chr0601140, Pt_Chr0601141, Pt_Chr0601142, Pt_Chr0601144, Pt_Chr0601145, Pt_Chr0601146, Pt_Chr0601147, Pt_Chr0700042, Pt_Chr0700227, Pt_Chr0700413, Pt_Chr0700416
Poaceae Sporobolus alterniflorus 1 Chr16G004490
Poaceae Thinopyrum elongatum 4 Tel1E01G132800, Tel2E01G165500, Tel3E01G720600 ...
Tel3E01G721500
Poaceae Triticum dicoccoides 5 gene_TRIDC3AG058470, gene_TRIDC3BG072530 ...
gene_TRIDC3BG072570, gene_TRIDC3BG072620, gene_TRIDC7BG014460
Poaceae Triticum aestivum 20 TraesCS1D02G064600.1.cds1, TraesCS1D02G064900.1 ...
TraesCS2B02G089900.1.cds1, TraesCS2D02G073300.1.cds1, TraesCS3A02G411400.1.cds1, TraesCS3A02G455200.1, TraesCS3B02G444800.1.cds1, TraesCS3B02G494000.1, TraesCS3B02G494200.1.cds1, TraesCS3B02G494300.1, TraesCS3B02G494700.1, TraesCS3B02G494800.1.cds1, TraesCS3B02G495200.1.cds1, TraesCS3B02G495300.1.cds1, TraesCS3B02G495500.1, TraesCS3D02G405700.1.cds1, TraesCS3D02G447900.1.cds1, TraesCS3D02G448400.1.cds1, TraesCS3D02G448500.1, TraesCS7D02G020200.1.cds1
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