Basic Information
Locus ID:
CQ.Regalona.r1.3AG0021890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 59943190 | 59954008 | + | CQ.Regalona.r1.3AG0021890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 43,434.50 Da | 36.09 | 98.04 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 72 | 335 | 1.6E-82 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 100 | 323 | 2.06E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 100 | 395 | 1.1E-85 | IPR027417 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 270 | 340 | 16.077328 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 100 | 259 | 27.466839 | IPR020588 |
| PRINTS | PR00142 | RecA protein signature | 311 | 340 | 2.7E-53 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 278 | 306 | 2.7E-53 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 158 | 187 | 2.7E-53 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 230 | 259 | 2.7E-53 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 192 | 221 | 2.7E-53 | IPR013765 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G10140.1 | RECA homolog 3. | 0 |
| RefSeq | XP_021741071.1 | DNA repair protein recA homolog 2, mitochondrial-like isoform X2 [Chenopodium quinoa] | 0 |
| Q8RY99 | DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g10140 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MAJ9 | RECA_2 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology