Basic Information
Locus ID:
CQ.Regalona.r1.3AG0021750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
PWWP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 59758456 | 59767053 | + | CQ.Regalona.r1.3AG0021750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.57 | 179,782.25 Da | 45.93 | 74.90 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05162 | PWWP | 1014 | 1096 | 9.88088E-26 | - |
| Pfam | PF00855 | PWWP domain | 1010 | 1096 | 6.7E-15 | IPR000313 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 1008 | 1114 | 4.87E-24 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 1004 | 1103 | 1.4E-23 | - |
| SMART | SM00293 | PWWP_4 | 1010 | 1071 | 7.5E-7 | IPR000313 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 1012 | 1061 | 14.063294 | IPR000313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 463 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1503 | 1519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 984 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1467 | 1519 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1349 | 1382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1423 | 1442 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 944 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1467 | 1493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 473 | 494 | - | - |
| Coils | Coil | Coil | 943 | 963 | - | - |
| Coils | Coil | Coil | 212 | 232 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02950.1 | Tudor/PWWP/MBT superfamily protein. | 0 |
| RefSeq | XP_021741059.1 | uncharacterized protein LOC110707345 [Chenopodium quinoa] | 0 |
| Q9LYZ0 | PWWP domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=PDP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803MAI6 | PWWP domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology