Basic Information
Locus ID:
CQ.Regalona.r1.3AG0019220
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 53853261 | 53854263 | + | CQ.Regalona.r1.3AG0019220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 9,494.82 Da | 57.19 | 102.00 | -0.03 |
Protein Domain:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01650.1 | RING domain ligase1. | 0 |
| RefSeq | XP_030496031.1 | E3 ubiquitin-protein ligase RGLG5 [Cannabis sativa] | 0 |
| Q9SS90 | E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S8K0L5 | RING-type E3 ubiquitin transferase OS=Musa balbisiana OX=52838 GN=C4D60_Mb08t01220 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0019220 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30181380 |
| Apiaceae | Apium graveolens | 1 | Ag1G01708 |
| Brassicaceae | Brassica nigra | 1 | BniB02g005730.2N |
| Poaceae | Echinochloa crus-galli | 5 | BH05.1082, BH05.3381, BH06.1739, BH08.1774, BH08.2339 |
| Poaceae | Zea mays | 1 | Zm00001eb354350_P001 |