Basic Information
Locus ID:
CQ.Regalona.r1.3AG0014760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Protein phosphatase 2C 57-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 22376875 | 22381077 | + | CQ.Regalona.r1.3AG0014760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 28,384.84 Da | 44.98 | 70.16 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00709 | Adenylosuccinate synthetase | 30 | 54 | 6.3E-8 | IPR001114 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 24 | 54 | 8.71E-7 | IPR027417 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 90 | 130 | 5.49E-8 | IPR011009 |
| Gene3D | G3DSA:3.40.440.10 | Adenylosuccinate Synthetase, subunit A, domain 1 | 25 | 85 | 6.2E-9 | IPR042109 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 86 | 139 | 1.0E-7 | - |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 33 | 7.0 | - |
| ProSitePatterns | PS01266 | Adenylosuccinate synthetase GTP-binding site. | 34 | 41 | - | IPR018220 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09840.11 | - | 0 |
| RefSeq | XP_021733998.1 | protein POLYCHOME-like [Chenopodium quinoa] | 0 |
| P51138 | Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa OX=3879 GN=MSK-2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L9K3 | Protein POLYCHOME OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20646 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3AG0014760 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_02.1253.V1.1, AsparagusV1_07.3327.V1.1 ... |
| Hydrocharitaceae | Thalassia testudinum | 3 | gene.Thate03g09050, gene.Thate04g10960, gene.Thate04g20310 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g06350 |