Basic Information
Locus ID:
CQ.Regalona.r1.3AG0013540
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 17503456 | 17515904 | + | CQ.Regalona.r1.3AG0013540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 45,567.33 Da | 56.27 | 60.81 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 350 | 390 | 1.50127E-24 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 349 | 395 | 4.9E-16 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 345 | 396 | 8.25E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 400 | 2.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 351 | 389 | 7.9E-4 | IPR001841 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 5 | 91 | 650.0 | IPR017066 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 327 | 402 | 2.9E-9 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 351 | 390 | 11.323791 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 23 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021750318.1 | probable E3 ubiquitin-protein ligase LUL3 [Chenopodium quinoa] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A834X3D8 | RING-type E3 ubiquitin transferase OS=Senna tora OX=362788 GN=G2W53_005716 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology