Basic Information
Locus ID:
CQ.Regalona.r1.3AG0012760
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 15401945 | 15411549 | - | CQ.Regalona.r1.3AG0012760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 127,507.28 Da | 66.94 | 56.38 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 723 | 852 | 8.02888E-61 | - |
| CDD | cd00201 | WW | 23 | 51 | 1.96138E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 2.8E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 528 | 698 | 5.5E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 735 | 843 | 5.9E-32 | IPR001650 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 52 | 5.31E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 576 | 858 | 6.82E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 713 | 884 | 3.2E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 478 | 712 | 8.5E-90 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 54 | 5.9E-6 | - |
| SMART | SM00490 | helicmild6 | 759 | 843 | 6.0E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 523 | 726 | 2.1E-65 | IPR014001 |
| SMART | SM00456 | ww_5 | 21 | 54 | 4.0E-8 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.8415 | IPR001202 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 738 | 882 | 25.297749 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 535 | 709 | 31.320377 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 504 | 532 | 11.408521 | IPR014014 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 655 | 663 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 964 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1052 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 153 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 111 | 141 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1028 | 1051 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 924 | 1142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 992 | 1027 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_021752168.1 | DEAD-box ATP-dependent RNA helicase 40-like [Chenopodium quinoa] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KU75 | DEAD-box ATP-dependent RNA helicase 40 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology