Basic Information
Locus ID:
CQ.Regalona.r1.3AG0012700
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Polygalacturonase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 15256508 | 15261154 | + | CQ.Regalona.r1.3AG0012700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 55,340.78 Da | 53.50 | 78.59 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 345 | 466 | 1.3E-35 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 113 | 311 | 2.6E-42 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 86 | 486 | 4.45E-88 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 68 | 498 | 2.0E-115 | IPR012334 |
| SMART | SM00710 | pbh1 | 388 | 409 | 2800.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 359 | 380 | 16.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 242 | 268 | 680.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 269 | 290 | 3500.0 | IPR006626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 71 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_021752444.1 | polygalacturonase At1g48100-like [Chenopodium quinoa] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9QXC5 | Polygalacturonase At1g80170 OS=Spinacia oleracea OX=3562 GN=SOVF_137910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology