Basic Information
Locus ID:
CQ.Regalona.r1.3AG0012090
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 13977845 | 13981750 | + | CQ.Regalona.r1.3AG0012090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 49,429.39 Da | 52.16 | 83.08 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 143 | 412 | 2.59749E-42 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 378 | 412 | 0.0011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 290 | 328 | 0.095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 242 | 277 | 1.6E-8 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 163 | 218 | 1.5E-4 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 111 | 414 | 4.39E-57 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 415 | 4.3E-115 | IPR015943 |
| SMART | SM00320 | WD40_4 | 238 | 277 | 1.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 196 | 234 | 1.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 331 | 371 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 154 | 193 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 286 | 328 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 374 | 412 | 3.2E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 161 | 202 | 11.143396 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 381 | 413 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 277 | 12.762857 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 277 | 15.487762 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 381 | 413 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 399 | 413 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_021752411.1 | cell division cycle 20.1, cofactor of APC complex-like [Chenopodium quinoa] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KU11 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology