Basic Information
Locus ID:
CQ.Regalona.r1.3AG0007160
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 7464958 | 7473495 | - | CQ.Regalona.r1.3AG0007160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 96,087.33 Da | 39.96 | 77.02 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 380 | 436 | 6.78503E-29 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 398 | 437 | 9.6E-11 | IPR023780 |
| Pfam | PF01426 | BAH domain | 119 | 229 | 8.7E-11 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 447 | 804 | 1.2E-37 | IPR001525 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 270 | 804 | 2.85E-80 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 377 | 437 | 1.32E-12 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 53 | 218 | 1.1E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 272 | 821 | 1.6E-235 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 599 | 770 | 1.6E-235 | - |
| SMART | SM00298 | chromo_7 | 380 | 439 | 1.9E-8 | IPR000953 |
| SMART | SM00439 | BAH_4 | 116 | 233 | 6.8E-18 | IPR001025 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 448 | 801 | 1.2E-31 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 116 | 233 | 17.925564 | IPR001025 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 270 | 811 | 47.84906 | IPR001525 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 381 | 437 | 11.326701 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 404 | 424 | - | IPR023779 |
| ProSitePatterns | PS00094 | C-5 cytosine-specific DNA methylases active site. | 451 | 463 | - | IPR018117 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 494 | 508 | 2.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 271 | 287 | 2.7E-12 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 540 | 553 | 2.7E-12 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 377 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_021762079.1 | DNA (cytosine-5)-methyltransferase CMT2-like isoform X2 [Chenopodium quinoa] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A803L224 | Cytosine-specific methyltransferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology