halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.3AG0006930

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: eukaryotic translation initiation factor

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3A	7277221	7298897	+	CQ.Regalona.r1.3AG0006930

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.01	237,941.34 Da	40.55	88.55	-0.38

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16266	IF2_aeIF5B_IV	1970	2065	8.6358E-32	-
CDD	cd01887	IF2_eIF5B	1510	1720	1.14242E-84	-
CDD	cd03703	aeIF5B_II	1731	1841	8.99421E-56	-
Pfam	PF03144	Elongation factor Tu domain 2	1746	1821	3.1E-10	IPR004161
Pfam	PF00009	Elongation factor Tu GTP binding domain	1511	1717	1.8E-34	IPR000795
Pfam	PF01545	Cation efflux family	408	769	9.5E-32	IPR002524
Pfam	PF11987	Translation-initiation factor 2	1847	1948	2.1E-22	IPR023115
SUPERFAMILY	SSF52156	Initiation factor IF2/eIF5b, domain 3	1832	1961	4.58E-34	IPR036925
SUPERFAMILY	SSF161111	Cation efflux protein transmembrane domain-like	401	770	2.09E-44	IPR027469
SUPERFAMILY	SSF50447	Translation proteins	1966	2102	9.98E-29	IPR009000
SUPERFAMILY	SSF52540	P-loop containing nucleoside triphosphate hydrolases	1506	1798	1.64E-66	IPR027417
Gene3D	G3DSA:1.20.1510.10	Cation efflux protein transmembrane domain	690	768	2.1E-15	IPR027469
Gene3D	G3DSA:3.40.50.10050	-	1849	1954	7.3E-38	IPR036925
Gene3D	G3DSA:1.20.1510.10	Cation efflux protein transmembrane domain	402	565	1.1E-35	IPR027469
Gene3D	G3DSA:2.40.30.10	Translation factors	1730	1848	4.3E-52	-
Gene3D	G3DSA:3.40.50.300	-	1501	1729	1.7E-71	IPR027417
Gene3D	G3DSA:2.40.30.10	Translation factors	1962	2101	9.1E-55	-
TIGRFAM	TIGR00231	small_GTP: small GTP-binding protein domain	1512	1636	3.1E-15	IPR005225
TIGRFAM	TIGR01297	CDF: cation diffusion facilitator family transporter	403	846	5.5E-70	IPR002524
ProSiteProfiles	PS51722	Translational (tr)-type guanine nucleotide-binding (G) domain profile.	1507	1723	45.483597	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	1591	1602	3.6E-6	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	1575	1585	3.6E-6	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	1511	1524	3.6E-6	IPR000795
PRINTS	PR00315	GTP-binding elongation factor signature	1627	1636	3.6E-6	IPR000795
MobiDBLite	mobidb-lite	consensus disorder prediction	1	20	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1464	1480	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1399	1417	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1067	1268	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	682	702	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	599	658	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1300	1422	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	954	1020	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	681	702	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	15	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1371	1390	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	537	658	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	551	592	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1084	1110	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1205	1268	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1334	1370	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	907	927	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1464	1501	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	961	981	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1123	1138	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1174	1195	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	29	48	-	-
Coils	Coil	Coil	1187	1223	-	-
Coils	Coil	Coil	1232	1294	-	-

Gene Ontology

Biological Process:

GO:0006812 (monoatomic cation transport) GO:0055085 (transmembrane transport)

Molecular Function:

GO:0003924 (GTPase activity) GO:0005525 (GTP binding) GO:0008324 (monoatomic cation transmembrane transporter activity)

Cellular Component:

GO:0016020 (membrane)

KEGG Pathway

KO Term:

K02703 (photosystem II P680 reaction center D1 protein [EC:1.10.3.9])

Pathway:

ko00195 (Photosynthesis) map00195 (Photosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways)

Module:

M00161 (Photosystem II)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein.
RefSeq	XP_021762306.1	eukaryotic translation initiation factor 5B-like [Chenopodium quinoa]
Swiss-Prot	Q10251	Eukaryotic translation initiation factor 5B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC56F8.03 PE=1 SV=1
TrEMBL	A0A803L242	Eukaryotic translation initiation factor 5B OS=Chenopodium quinoa OX=63459 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg6070
Aizoaceae	Mesembryanthemum crystallinum	2	gene_15301, gene_245
Amaranthaceae	Atriplex hortensis	3	Ah003421, Ah018262, Ah018421
Amaranthaceae	Beta vulgaris	3	BVRB_3g050350, BVRB_7g173810, BVRB_9g202210
Amaranthaceae	Salicornia bigelovii	6	Sbi_jg14893, Sbi_jg28723, Sbi_jg2920, Sbi_jg31007 ... Sbi_jg31009, Sbi_jg55702
Amaranthaceae	Salicornia europaea	7	Seu_jg22981, Seu_jg22982, Seu_jg26226, Seu_jg6833 ... Seu_jg6939, Seu_jg6940, Seu_jg6959
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00004375, GOSA_00004376, GOSA_00017916
Amaranthaceae	Suaeda glauca	2	Sgl01135, Sgl06220
Amaranthaceae	Chenopodium album	5	gene:ENSEOMG00000003077, gene:ENSEOMG00000021883 ... gene:ENSEOMG00000022784, gene:ENSEOMG00000031997, gene:ENSEOMG00000044257
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.3AG0006900, CQ.Regalona.r1.3AG0006930
Anacardiaceae	Pistacia vera	1	pistato.v30037970
Apiaceae	Apium graveolens	6	Ag3G00748, Ag3G00749, Ag3G01911, Ag4G02445, Ag4G02446 ... Ag7G00454
Arecaceae	Cocos nucifera	2	COCNU_14G000450, scaffold033353G000040
Arecaceae	Phoenix dactylifera	2	gene-LOC103720357, gene-LOC103721040
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.1583.V1.1
Asteraceae	Flaveria trinervia	3	Ftri10G06402, Ftri12G27292, Ftri9G10744
Brassicaceae	Arabidopsis thaliana	5	AT1G21160.1, AT1G76720.1, AT1G76810.1, AT1G76820.1 ... AT2G27700.2
Brassicaceae	Eutrema salsugineum	4	Thhalv10006634m.g.v1.0, Thhalv10018018m.g.v1.0 ... Thhalv10021382m.g.v1.0, Thhalv10022147m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp5g31970.v2.2
Brassicaceae	Brassica nigra	4	BniB02g016020.2N, BniB02g016030.2N, BniB03g009000.2N ... BniB05g073240.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq08G1632
Casuarinaceae	Casuarina glauca	1	Cgl08G1673
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno07g04590
Dunaliellaceae	Dunaliella salina	1	Dusal.0041s00031.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate03g24390
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG06.718
Plantaginaceae	Plantago ovata	8	Pov_00011481, Pov_00011596, Pov_00011597, Pov_00011598 ... Pov_00012015, Pov_00015017, Pov_00015018, Pov_00023099
Plumbaginaceae	Limonium bicolor	2	Lb2G10385, Lb3G16650
Poaceae	Echinochloa crus-galli	6	AH05.3560, BH05.1205, BH05.3558, CH01.2697, CH05.1503 ... CH05.3712
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0360980, gene-QOZ80_5AG0391570 ... gene-QOZ80_5BG0409430, gene-QOZ80_5BG0439620
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.1HG0094710.1
Poaceae	Lolium multiflorum	2	gene-QYE76_015006, gene-QYE76_042706
Poaceae	Oryza coarctata	3	Oco02G013470, Oco09G018380, Oco10G018310
Poaceae	Oryza sativa	4	LOC_Os01g40150.1, LOC_Os01g40170.1, LOC_Os05g51500.1 ... LOC_Os12g31880.1
Poaceae	Paspalum vaginatum	3	gene-BS78_08G078500, gene-BS78_08G078600 ... gene-BS78_09G258100
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505892, Pt_Chr0703558
Poaceae	Sporobolus alterniflorus	11	Chr01G016380, Chr04G015670, Chr04G024780, Chr06G016320 ... Chr06G016340, Chr06G016350, Chr07G023610, Chr0G020300, Chr0G030010, Chr12G020410, Chr18G015880
Poaceae	Thinopyrum elongatum	4	Tel1E01G740900, Tel1E01G741100, Tel1E01G742100 ... Tel7E01G813100
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064300, gene_TRIDC1BG073510 ... gene_TRIDC7AG066570, gene_TRIDC7BG060760
Poaceae	Triticum aestivum	6	TraesCS1A02G438600.2, TraesCS1B02G472500.1 ... TraesCS1D02G446400.1, TraesCS1D02G446900.2, TraesCS7A02G479800.2, TraesCS7B02G382100.1
Poaceae	Zea mays	1	Zm00001eb345280_P001
Poaceae	Zoysia japonica	2	nbis-gene-13527, nbis-gene-48615
Poaceae	Zoysia macrostachya	2	Zma_g25096, Zma_g27484
Portulacaceae	Portulaca oleracea	5	evm.TU.LG01.629, evm.TU.LG03.129, evm.TU.LG03.17 ... evm.TU.LG04.140, evm.TU.LG04.143
Posidoniaceae	Posidonia oceanica	1	gene.Posoc08g14760
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_8_RagTag.1614
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-19623, nbisL1-mrna-8731
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-402, nbisL1-mrna-8952
Rhizophoraceae	Ceriops zippeliana	4	nbisL1-mrna-15078, nbisL1-mrna-15079, nbisL1-mrna-8068 ... nbisL1-mrna-8069
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000018l.50, evm.TU.utg000023l.36
Rhizophoraceae	Kandelia obovata	1	Maker00003101
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-19721, nbisL1-mrna-9392
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-23779
Salicaceae	Populus euphratica	5	populus_peu00417, populus_peu18706, populus_peu18723 ... populus_peu29630, populus_peu29631
Solanaceae	Lycium barbarum	1	gene-LOC132636476
Solanaceae	Solanum chilense	2	SOLCI001496400, SOLCI003795700
Solanaceae	Solanum pennellii	4	gene-LOC107014299, gene-LOC107014401, gene-LOC107017076 ... gene-LOC107023346
Tamaricaceae	Reaumuria soongarica	2	STRG.5392_chr02_+, gene_17626
Tamaricaceae	Tamarix chinensis	1	TC03G1943
Zosteraceae	Zostera marina	4	Zosma01g35560.v3.1, Zosma04g20870.v3.1, Zosma277g00050.v3.1 ... Zosma277g00060.v3.1