Basic Information
Locus ID:
CQ.Regalona.r1.3AG0005600
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 6028383 | 6030727 | - | CQ.Regalona.r1.3AG0005600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.35 | 18,489.94 Da | 45.00 | 90.81 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 45 | 7.6E-11 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 75 | 1.44E-18 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 78 | 6.6E-18 | - |
| SMART | SM00256 | fbox_2 | 4 | 44 | 5.5E-5 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 44 | 13.153697 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021763662.1 | uncharacterized protein LOC110728295 [Chenopodium quinoa] | 0 |
| Q9P7W4 | F-box/WD repeat-containing protein pof10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pof10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L2G7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13849 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16251 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018571 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g051410 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg15019, Sbi_jg55839 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26338 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017799 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01276, Sgl06358 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000032140, gene:ENSEOMG00000045595 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0005600, CQ.Regalona.r1.3BG0005680 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30165390 |
| Apiaceae | Apium graveolens | 1 | Ag10G02497 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103719478, gene-LOC120108113 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno14g08830 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0641s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g18690 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1219 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010991 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G21039 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.3034, BH03.2087, BH07.2858, CH07.2937 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0141280, gene-QOZ80_2BG0196880 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0604920.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G018450, Oco04G019180 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g46140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G235800 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0203771, Pt_Chr0203774, Pt_Chr0203786 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G004890, Chr09G023230, Chr15G006400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG040140, gene_TRIDC6BG047080 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G261600.1, TraesCS6B02G288900.2 ... |
| Poaceae | Zea mays | 2 | Zm00001eb187590_P001, Zm00001eb421680_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g16897 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG11.1704 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc06g12580 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_3_RagTag.1080 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-912, nbisL1-mrna-914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-19266 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-2338 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000019l.597 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00001964 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-6120 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-1768 |
| Salicaceae | Populus euphratica | 1 | populus_peu27978 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632128 |
| Solanaceae | Solanum chilense | 1 | SOLCI006441700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012564 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6139_chr04_+ |
| Zosteraceae | Zostera marina | 1 | Zosma05g33740.v3.1 |