Basic Information
Locus ID:
CQ.Regalona.r1.3AG0004980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 5441401 | 5442108 | + | CQ.Regalona.r1.3AG0004980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.24 | 27,098.25 Da | 34.60 | 91.15 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 16 | 77 | 1.06E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 54 | 2.3E-6 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06240.1 | F-box family protein. | 0 |
| RefSeq | XP_021729085.1 | F-box/kelch-repeat protein At3g23880-like isoform X3 [Chenopodium quinoa] | 0 |
| Q8GXC7 | F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana OX=3702 GN=At3g06240 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803L2L7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16616 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018633, Ah018634, Ah034289 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35729 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3693, Seu_jg3694 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020056, GOSA_00020058, GOSA_00020059 |
| Amaranthaceae | Suaeda glauca | 24 | Sgl01351, Sgl01352, Sgl01353, Sgl01354, Sgl01355, Sgl06434 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000028850, gene:ENSEOMG00000030685 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.2BG0014960, CQ.Regalona.r1.3AG0004980 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613212 |