Basic Information
Locus ID:
CQ.Regalona.r1.3AG0004820
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 5281733 | 5283620 | - | CQ.Regalona.r1.3AG0004820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 40,389.06 Da | 33.49 | 91.81 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 315 | 357 | 1.52669E-17 | - |
| Pfam | PF13639 | Ring finger domain | 314 | 357 | 8.0E-13 | IPR001841 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 41 | 98 | 6.2E-12 | IPR025287 |
| SUPERFAMILY | SSF57850 | RING/U-box | 305 | 359 | 4.82E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 361 | 5.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 356 | 4.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 357 | 12.164712 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021761648.1 | RING-H2 finger protein ATL22-like [Chenopodium quinoa] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N0 | GUB_WAK_bind domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology