Basic Information
Locus ID:
CQ.Regalona.r1.3AG0004660
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 5182580 | 5188497 | - | CQ.Regalona.r1.3AG0004660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 82,449.06 Da | 50.77 | 91.06 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 46 | 104 | 4.0E-13 | IPR025287 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 184 | 245 | 6.1E-7 | IPR032872 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 537 | 583 | 5.3E-7 | IPR032872 |
| Pfam | PF13639 | Ring finger domain | 675 | 718 | 2.5E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 341 | 381 | 1.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 334 | 381 | 2.34E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 668 | 722 | 2.31E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 639 | 723 | 6.6E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 304 | 387 | 4.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 676 | 717 | 5.7E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 341 | 382 | 0.024 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 341 | 383 | 10.527129 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 676 | 718 | 12.754832 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021764306.1 | putative RING-H2 finger protein ATL21A [Chenopodium quinoa] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A803L2N9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology