Basic Information
Locus ID:
CQ.Regalona.r1.3AG0002520
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 2708225 | 2716402 | + | CQ.Regalona.r1.3AG0002520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 58,591.12 Da | 43.18 | 86.28 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 49 | 132 | 1.4E-18 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 202 | 270 | 3.7E-11 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 298 | 4.84E-48 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 348 | 409 | 2.32E-8 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 335 | 420 | 2.4E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 186 | 292 | 1.6E-20 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 6 | 169 | 1.0E-32 | IPR036770 |
| SMART | SM00248 | ANK_2a | 202 | 231 | 2.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.092 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 1.1 | IPR002110 |
| SMART | SM00248 | ANK_2a | 245 | 277 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 2.8E-5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 245 | 271 | 10.68342 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.469215 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 245 | 271 | 10.71288 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 202 | 234 | 10.73959 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 202 | 231 | 10.073198 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.58583 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.430799 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 353 | 403 | 9.405901 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.409914 | - |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 368 | 377 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 494 | 515 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 0 |
| RefSeq | XP_021730118.1 | E3 ubiquitin-protein ligase XBAT33-like [Chenopodium quinoa] | 0 |
| Q4FE45 | E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana OX=3702 GN=XBAT33 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0G7 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology