Basic Information
Locus ID:
CQ.Regalona.r1.3AG0002390
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 2580784 | 2587549 | - | CQ.Regalona.r1.3AG0002390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 25,772.31 Da | 71.40 | 83.20 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 183 | 225 | 9.26022E-17 | - |
| Pfam | PF13639 | Ring finger domain | 183 | 225 | 2.0E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 183 | 229 | 2.72E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 230 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 184 | 224 | 3.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 184 | 225 | 11.692616 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 106 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 109 | 134 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04790.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021730135.1 | E3 ubiquitin ligase BIG BROTHER-like [Chenopodium quinoa] | 0 |
| Q06003 | E3 ubiquitin-protein ligase goliath OS=Drosophila melanogaster OX=7227 GN=gol PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RC92 | RING-type domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_083360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology