Basic Information
Locus ID:
CQ.Regalona.r1.3AG0002360
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 2491071 | 2500941 | - | CQ.Regalona.r1.3AG0002360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.72 | 86,376.84 Da | 51.21 | 77.75 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 677 | 727 | 3.38126E-13 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 227 | 287 | 1.4E-11 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 306 | 351 | 1.7E-5 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 227 | 294 | 1.68E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 300 | 348 | 4.41E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 674 | 743 | 1.06E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 235 | 3.85E-10 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 283 | 499 | 1.9E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 670 | 752 | 3.9E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 238 | 1.6E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 677 | 717 | 0.71 | IPR001841 |
| SMART | SM00184 | ring_2 | 157 | 205 | 2.2 | IPR001841 |
| SMART | SM00184 | ring_2 | 312 | 363 | 2.9 | IPR001841 |
| SMART | SM00647 | ibrneu5 | 298 | 360 | 0.56 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 226 | 287 | 1.2E-16 | IPR002867 |
| SMART | SM00184 | ring_2 | 246 | 286 | 9.9 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 673 | 765 | 16.204386 | IPR044066 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 153 | 361 | 29.994425 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 677 | 723 | 8.948558 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 157 | 203 | 8.845287 | IPR001841 |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_021730138.1 | probable E3 ubiquitin-protein ligase ARI8 [Chenopodium quinoa] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0H9 | RING-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology