Basic Information
Locus ID:
CQ.Regalona.r1.3AG0002180
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 2280183 | 2287561 | - | CQ.Regalona.r1.3AG0002180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.56 | 48,179.10 Da | 36.38 | 70.83 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18044 | CCCH-type zinc finger | 121 | 141 | 6.3E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 312 | 346 | 0.018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 186 | 1.7E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 273 | 307 | 0.0014 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 117 | 142 | 3.66E-7 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 435 | 3.48E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 230 | 442 | 4.0E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 229 | 2.3E-11 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 7 | 55 | 1.2E-5 | - |
| SMART | SM00320 | WD40_4 | 270 | 307 | 5.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 347 | 4.0E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 28 | 51 | 0.14 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 119 | 143 | 6.0E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 397 | 434 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 351 | 394 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 148 | 186 | 1.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 226 | 263 | 45.0 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 26 | 52 | 9.976483 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 155 | 186 | 8.992876 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 155 | 195 | 11.544415 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 277 | 310 | 9.441055 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 117 | 144 | 13.816626 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 277 | 316 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 317 | 346 | 8.536777 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 294 | 308 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 334 | 348 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 294 | 308 | 1.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 1.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_021730161.1 | zinc finger CCCH domain-containing protein 48-like [Chenopodium quinoa] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803M0J9 | C3H1-type domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology