Basic Information
Locus ID:
CQ.Regalona.r1.3AG0001150
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3A | 1254675 | 1263451 | - | CQ.Regalona.r1.3AG0001150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 57,088.45 Da | 49.05 | 76.04 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 328 | 505 | 1.54399E-111 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 15 | 109 | 1.1E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 327 | 434 | 6.7E-19 | IPR000555 |
| SUPERFAMILY | SSF140856 | USP8 N-terminal domain-like | 16 | 116 | 4.58E-5 | - |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 330 | 461 | 1.57E-19 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 315 | 505 | 1.9E-72 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 3 | 133 | 3.8E-33 | - |
| SMART | SM00232 | pad1_6 | 330 | 458 | 8.4E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 331 | 461 | 30.575212 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 326 | - | - |
| Coils | Coil | Coil | 96 | 116 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_021730269.1 | AMSH-like ubiquitin thioesterase 3 [Chenopodium quinoa] | 0 |
| Q5PNU3 | AMSH-like ubiquitin thioesterase 3 OS=Arabidopsis thaliana OX=3702 GN=AMSH3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803NBX0 | AMSH-like ubiquitin thioesterase 3 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology