Basic Information
Locus ID:
CQ.Regalona.r1.2BG0027880
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 83971367 | 83976331 | + | CQ.Regalona.r1.2BG0027880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 141,257.91 Da | 36.43 | 105.84 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 152 | 442 | 8.82819E-83 | IPR044746 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1019 | 1239 | 1.48533E-117 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 471 | 670 | 6.24078E-109 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 804 | 996 | 2.36964E-54 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 153 | 421 | 2.7E-19 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 799 | 944 | 1.5E-17 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1038 | 1186 | 1.6E-30 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 489 | 623 | 2.6E-20 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1014 | 1247 | 4.62E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 469 | 686 | 2.77E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 802 | 996 | 2.62E-27 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 141 | 442 | 2.49E-24 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1004 | 1256 | 1.1E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 734 | 1002 | 7.7E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 451 | 710 | 3.9E-76 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 123 | 450 | 1.9E-38 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1047 | 1232 | 5.5E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 498 | 671 | 3.4E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 803 | 984 | 20.025545 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1021 | 1255 | 19.021067 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 473 | 694 | 23.442814 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 151 | 434 | 25.678408 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 596 | 610 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 710 | 744 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_021859153.1 | ABC transporter C family member 3-like isoform X1 [Spinacia oleracea] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L033 | ABC transmembrane type-1 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology