Basic Information
Locus ID:
CQ.Regalona.r1.2BG0024890
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 80540491 | 80546335 | + | CQ.Regalona.r1.2BG0024890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 85,519.99 Da | 41.13 | 81.64 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 25 | 178 | 4.59602E-43 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 683 | 724 | 4.42797E-23 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 416 | 650 | 1.4E-27 | IPR001245 |
| Pfam | PF04564 | U-box domain | 679 | 749 | 7.3E-17 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 400 | 651 | 2.95E-52 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 37 | 142 | 2.76E-7 | - |
| SUPERFAMILY | SSF64593 | Intermediate filament protein, coiled coil region | 272 | 340 | 4.88E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 668 | 749 | 3.18E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 678 | 749 | 2.4E-28 | IPR013083 |
| Gene3D | G3DSA:1.20.5.170 | - | 238 | 342 | 7.9E-6 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 25 | 169 | 1.4E-6 | IPR014729 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 388 | 482 | 2.4E-21 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 484 | 665 | 9.0E-35 | - |
| SMART | SM00504 | Ubox_2 | 682 | 745 | 2.4E-29 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 410 | 661 | 23.340193 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 678 | 749 | 39.312057 | IPR003613 |
| Coils | Coil | Coil | 361 | 381 | - | - |
| Coils | Coil | Coil | 284 | 332 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_021748908.1 | U-box domain-containing protein 33-like [Chenopodium quinoa] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803KZA4 | Serine/threonine-protein kinase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology