Basic Information
Locus ID:
CQ.Regalona.r1.2BG0023650
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 79289215 | 79290885 | + | CQ.Regalona.r1.2BG0023650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 42,824.89 Da | 49.80 | 93.57 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 192 | 321 | 9.4E-18 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 34 | 111 | 1.8E-4 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 180 | 321 | 7.32E-22 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 28 | 172 | 1.11E-16 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 21 | 168 | 2.7E-11 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 169 | 321 | 3.5E-14 | IPR036378 |
| SMART | SM00554 | fasc_3 | 218 | 322 | 2.7E-15 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 180 | 319 | 16.992884 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 169 | 10.956114 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 393 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_021748067.1 | fasciclin-like arabinogalactan protein 10 [Chenopodium quinoa] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803KYX5 | Fasciclin-like arabinogalactan protein 8 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology