Basic Information
Locus ID:
CQ.Regalona.r1.2BG0021490
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 77280524 | 77289132 | - | CQ.Regalona.r1.2BG0021490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 166,712.41 Da | 37.29 | 106.30 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1246 | 1466 | 3.86619E-121 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 308 | 596 | 4.15549E-99 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 929 | 1223 | 1.30902E-90 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 622 | 822 | 3.74112E-108 | - |
| Pfam | PF00005 | ABC transporter | 640 | 774 | 3.5E-19 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1265 | 1413 | 2.8E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 310 | 575 | 4.1E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 940 | 1175 | 1.2E-32 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 298 | 596 | 3.79E-36 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 838 | 3.52E-56 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1240 | 1478 | 1.71E-65 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 928 | 1228 | 9.68E-49 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 620 | 851 | 2.9E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 274 | 605 | 3.0E-52 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 892 | 1229 | 1.1E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1231 | 1484 | 4.9E-79 | IPR027417 |
| SMART | SM00382 | AAA_5 | 1274 | 1466 | 9.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 649 | 822 | 1.9E-11 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 845 | 21.808836 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 931 | 1211 | 32.698376 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1248 | 1482 | 16.306662 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 310 | 588 | 36.409908 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 747 | 761 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 879 | 894 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 871 | 894 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021755169.1 | putative ABC transporter C family member 15 isoform X1 [Chenopodium quinoa] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803LIL0 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology