Basic Information
Locus ID:
CQ.Regalona.r1.2BG0021480
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 77270402 | 77276744 | - | CQ.Regalona.r1.2BG0021480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 145,951.67 Da | 35.62 | 106.28 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 793 | 1037 | 2.68932E-58 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 173 | 461 | 3.36552E-96 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 487 | 687 | 1.6915E-105 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1060 | 1280 | 9.91518E-122 | - |
| Pfam | PF00005 | ABC transporter | 505 | 639 | 2.9E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 175 | 440 | 1.9E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 855 | 989 | 4.7E-15 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1079 | 1227 | 1.4E-28 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 483 | 704 | 5.22E-56 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 162 | 461 | 1.83E-32 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 791 | 1042 | 7.32E-29 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1054 | 1292 | 4.74E-65 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 483 | 714 | 6.4E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1046 | 1298 | 7.6E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 139 | 470 | 4.5E-47 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 836 | 1045 | 9.6E-29 | IPR036640 |
| SMART | SM00382 | AAA_5 | 514 | 687 | 1.3E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1088 | 1280 | 8.6E-13 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 855 | 1025 | 18.913227 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1064 | 1296 | 16.353348 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 175 | 453 | 31.791409 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 487 | 710 | 21.395338 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 612 | 626 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 752 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 740 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_021755171.1 | putative ABC transporter C family member 15 isoform X3 [Chenopodium quinoa] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M4H7 | ABC-type xenobiotic transporter OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology