Basic Information
Locus ID:
CQ.Regalona.r1.2BG0021230
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Sec12-like protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 77072067 | 77076059 | + | CQ.Regalona.r1.2BG0021230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.77 | 42,474.69 Da | 27.71 | 87.45 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 152 | 231 | 1.5E-5 | IPR024977 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 69 | 347 | 2.51E-33 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 41 | 356 | 4.0E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 267 | 306 | 35.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 135 | 173 | 0.019 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 215 | 4.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 1.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 190 | 224 | 8.703868 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021755153.1 | SEC12-like protein 2 [Chenopodium quinoa] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A803M4G0 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology