Basic Information
Locus ID:
CQ.Regalona.r1.2BG0021120
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 76952160 | 76955213 | + | CQ.Regalona.r1.2BG0021120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 72,509.53 Da | 39.01 | 64.56 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 425 | 448 | 0.32 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 518 | 632 | 2.5E-37 | IPR032867 |
| Pfam | PF01535 | PPR repeat | 322 | 350 | 0.014 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 353 | 382 | 2.4E-4 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 253 | 414 | 1.0E-25 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 353 | 385 | 8.5E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 350 | 384 | 10.566751 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25580.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021755138.1 | pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Chenopodium quinoa] | 0 |
| Q680H3 | Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H75 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803M4E5 | DYW_deaminase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology