Basic Information
Locus ID:
CQ.Regalona.r1.2BG0014960
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 69348090 | 69353127 | + | CQ.Regalona.r1.2BG0014960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 86,178.48 Da | 41.05 | 91.30 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 364 | 403 | 1.9E-4 | IPR001810 |
| Pfam | PF00646 | F-box domain | 22 | 59 | 9.7E-4 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 98 | 2.88E-9 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 364 | 439 | 3.79E-9 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 19 | 61 | 1.3E-5 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 350 | 404 | 3.3E-5 | - |
| SMART | SM00256 | fbox_2 | 23 | 64 | 0.0028 | IPR001810 |
| SMART | SM00256 | fbox_2 | 367 | 408 | 0.0099 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 472 | 707 | 1.2E-17 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021729253.1 | F-box/kelch-repeat protein At3g23880-like [Chenopodium quinoa] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803N198 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16616 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah018633, Ah018634, Ah034289 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg35729 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg3693, Seu_jg3694 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00020056, GOSA_00020058, GOSA_00020059 |
| Amaranthaceae | Suaeda glauca | 24 | Sgl01351, Sgl01352, Sgl01353, Sgl01354, Sgl01355, Sgl06434 ... |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000028850, gene:ENSEOMG00000030685 ... |
| Amaranthaceae | Chenopodium quinoa | 9 | CQ.Regalona.r1.2BG0014960, CQ.Regalona.r1.3AG0004980 ... |
| Plantaginaceae | Plantago ovata | 1 | Pov_00023045 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613212 |