Basic Information
Locus ID:
CQ.Regalona.r1.2BG0014510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
FBD-associated F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 68568989 | 68570488 | - | CQ.Regalona.r1.2BG0014510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 57,142.46 Da | 60.41 | 99.40 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08387 | FBD | 392 | 434 | 5.2E-10 | IPR006566 |
| Pfam | PF00646 | F-box domain | 26 | 63 | 1.6E-5 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 81 | 1.57E-11 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 140 | 376 | 7.46E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 144 | 472 | 4.1E-8 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 13 | 64 | 2.6E-6 | - |
| SMART | SM00579 | 9598neu4hmm | 397 | 475 | 2.6E-6 | IPR006566 |
| SMART | SM00256 | fbox_2 | 30 | 70 | 0.0063 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 24 | 60 | 9.576953 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26030.4 | - | 0 |
| RefSeq | XP_021715929.1 | F-box/FBD/LRR-repeat protein At2g26030-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8H1M0 | F-box/FBD/LRR-repeat protein At2g26030 OS=Arabidopsis thaliana OX=3702 GN=At2g26030 PE=2 SV=2 | 0 | |
| TrEMBL | A0A803MEZ7 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg3430 |
| Aizoaceae | Mesembryanthemum crystallinum | 4 | gene_14946, gene_2052, gene_21862, gene_26502 |
| Amaranthaceae | Atriplex hortensis | 48 | Ah002915, Ah002920, Ah003004, Ah004139, Ah004140, Ah004142 ... |
| Amaranthaceae | Beta vulgaris | 4 | BVRB_2g035510, BVRB_5g109100, BVRB_5g109110, BVRB_7g159590 |
| Amaranthaceae | Salicornia bigelovii | 21 | Sbi_jg15817, Sbi_jg17979, Sbi_jg19532, Sbi_jg19533 ... |
| Amaranthaceae | Salicornia europaea | 14 | Seu_jg10634, Seu_jg10635, Seu_jg1185, Seu_jg13817 ... |
| Amaranthaceae | Suaeda aralocaspica | 15 | GOSA_00003627, GOSA_00009189, GOSA_00009190, GOSA_00009191 ... |
| Amaranthaceae | Suaeda glauca | 41 | Sgl00558, Sgl05572, Sgl18083, Sgl22021, Sgl22137, Sgl27283 ... |
| Amaranthaceae | Chenopodium album | 51 | gene:ENSEOMG00000005049, gene:ENSEOMG00000007202 ... |
| Amaranthaceae | Chenopodium quinoa | 42 | CQ.Regalona.r1.2AG0012770, CQ.Regalona.r1.2AG0012790 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30150730 |
| Brassicaceae | Brassica nigra | 1 | BniB01g014240.2N |
| Plantaginaceae | Plantago ovata | 3 | Pov_00039776, Pov_00040470, Pov_00040689 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061951 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-29604, nbis-gene-29605 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG04.3150, evm.TU.LG04.3151, evm.TU.LG16.532 ... |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627161 |
| Solanaceae | Solanum chilense | 1 | SOLCI004431500 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.31115_chr11_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0268 |