Basic Information
Locus ID:
CQ.Regalona.r1.2BG0012770
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Proteinaceous RNase P 1, chloroplastic
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 64006804 | 64022924 | + | CQ.Regalona.r1.2BG0012770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 83,383.00 Da | 43.84 | 81.00 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03203 | GST_C_Lambda | 618 | 737 | 3.79567E-60 | - |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 94 | 305 | 7.0E-71 | IPR033443 |
| Pfam | PF16865 | Glutathione S-transferase, C-terminal domain | 631 | 717 | 4.9E-7 | IPR041695 |
| Pfam | PF16953 | Protein-only RNase P | 346 | 574 | 5.5E-70 | IPR031595 |
| SUPERFAMILY | SSF47616 | GST C-terminal domain-like | 609 | 740 | 2.52E-20 | IPR036282 |
| Gene3D | G3DSA:1.20.1050.10 | - | 611 | 744 | 7.6E-54 | - |
| Gene3D | G3DSA:3.40.50.11980 | - | 364 | 540 | 2.3E-223 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 103 | 577 | 2.3E-223 | IPR011990 |
| ProSiteProfiles | PS50405 | Soluble glutathione S-transferase C-terminal domain profile. | 591 | 740 | 10.338365 | IPR010987 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 183 | 217 | 8.889672 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_021732705.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Chenopodium quinoa] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M9H1 | ribonuclease P OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology