Basic Information
Locus ID:
CQ.Regalona.r1.2BG0012630
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U4 U6 small nuclear ribonucleoprotein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 63469585 | 63477861 | - | CQ.Regalona.r1.2BG0012630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.03 | 83,277.78 Da | 53.97 | 62.34 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08572 | pre-mRNA processing factor 3 (PRP3) | 353 | 582 | 3.5E-63 | IPR013881 |
| Pfam | PF06544 | Protein of unknown function (DUF1115) | 607 | 731 | 1.8E-40 | IPR010541 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 242 | - | - |
| Coils | Coil | Coil | 499 | 522 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28060.1 | Pre-mRNA-splicing factor 3. | 0 |
| RefSeq | XP_021716841.1 | protein RDM16-like isoform X1 [Chenopodium quinoa] | 0 |
| Q9C7E7 | Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N9N7 | U4/U6 small nuclear ribonucleoprotein Prp3 OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14359 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_12952 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033457 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g036900 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20818, Sbi_jg22947 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16818 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009329 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl61999, Sgl66559 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000017731, gene:ENSEOMG00000021852 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0012630, CQ.Regalona.r1.7AG0012570 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30171920 |
| Apiaceae | Apium graveolens | 2 | Ag8G00800, AgUnG01009 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G013370, COCNU_14G012920 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103710186, gene-LOC103712035 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.3569.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri13G01717, Ftri18G11679 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G28060.1, AT3G55930.1, AT3G56790.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006834m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g24240.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g017330.2N, BniB03g032940.2N, BniB04g042520.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0693 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0701 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g09890 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0624s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g10910 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8201 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1517 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00040145 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G12387, Lb2G12388, Lb2G12429 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.1136, BH03.1297, CH03.1460 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_4AG0309720, gene-QOZ80_4BG0340890 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469310.1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004142, gene-QYE76_016981, gene-QYE76_027151 |
| Poaceae | Oryza coarctata | 3 | Oco04G010340, Oco17G001010, Oco18G000880 |
| Poaceae | Oryza sativa | 1 | LOC_Os09g07500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G137100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0705068, Pt_Chr0705091 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr10G003810, Chr11G015110, Chr14G006280, Chr21G007210 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G285300, Tel7E01G174000 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC4AG060440, gene_TRIDC4AG060530 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS4A02G380600.1, TraesCS5A02G168300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb204030_P002, Zm00001eb238080_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-24538 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31942 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g12740 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.412, evm.TU.Scaffold_4_RagTag.1671 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26067 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10752, nbisL1-mrna-8483, nbisL1-mrna-8484 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-14167, nbisL1-mrna-14168, nbisL1-mrna-4484 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.929 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000184 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17556, nbisL1-mrna-2123 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9504 |
| Salicaceae | Populus euphratica | 2 | populus_peu06361, populus_peu20188 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132606062 |
| Solanaceae | Solanum chilense | 2 | SOLCI000212900, SOLCI007045600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107018979, gene-LOC107023328 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.28756_chr04_+, gene_12281 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G3795 |
| Zosteraceae | Zostera marina | 1 | Zosma01g21800.v3.1 |