Basic Information
Locus ID:
CQ.Regalona.r1.2BG0011250
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 50059223 | 50073328 | - | CQ.Regalona.r1.2BG0011250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 34,048.66 Da | 30.27 | 89.90 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14350 | UBA_DCNL | 8 | 48 | 8.54423E-14 | - |
| Pfam | PF14555 | UBA-like domain | 9 | 47 | 2.7E-10 | - |
| Pfam | PF03556 | Cullin binding | 149 | 283 | 1.6E-34 | IPR005176 |
| SUPERFAMILY | SSF46934 | UBA-like | 7 | 46 | 3.12E-7 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 6 | 47 | 7.8E-8 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 53 | 161 | 5.8E-9 | - |
| Gene3D | G3DSA:1.10.238.200 | Cullin, PONY binding domain | 162 | 289 | 1.1E-37 | IPR042460 |
| ProSiteProfiles | PS51229 | DCUN1 domain profile. | 54 | 285 | 39.014084 | IPR005176 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12760.1 | 0 | |
| RefSeq | XP_021775543.1 | DCN1-like protein 1 [Chenopodium quinoa] | 0 |
| Q9U3C8 | Defective in cullin neddylation protein 1 OS=Caenorhabditis elegans OX=6239 GN=dcn-1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9QCV6 | Defective in cullin neddylation protein OS=Spinacia oleracea OX=3562 GN=SOVF_198880 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg24709, jg38514 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7744 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah033861 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg19541, Sbi_jg44094 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg17876 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00019052 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl64400, Sgl68852 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000019333, gene:ENSEOMG00000019383 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008720, CQ.Regalona.r1.2BG0011250 |
| Apiaceae | Apium graveolens | 1 | Ag2G01393 |
| Arecaceae | Cocos nucifera | 2 | COCNU_05G004360, COCNU_13G008440 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103715917, gene-LOC103724063 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2719.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri15G01776, Ftri3G17636, Ftri7G22100 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G12760.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021347m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10920.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052330.2N, BniB07g026260.2N, BniB07g056090.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq01G1718 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl01G1874 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g08970 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1082s00002.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g38100 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8996 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2958 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006185 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G05355 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.932, AH07.3437, BH06.963, BH07.3269, CH06.1059 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0145330, gene-QOZ80_2BG0200790 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0450380.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G006090, Oco12G006130 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g12690.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G275300, gene-BS78_10G099000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0703479 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G019280, Chr14G004560, Chr21G003970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G208300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG017430, gene_TRIDC5BG018450 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G109900.1, TraesCS5B02G115600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb194650_P003, Zm00001eb279840_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-35155, nbis-gene-51371 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g29409, Zma_g31646 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2505, evm.TU.LG08.177 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20220 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.32 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10425 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9215 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-10723 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000006l.22 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013933 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-9323 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6860 |
| Salicaceae | Populus euphratica | 1 | populus_peu06695 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620380, gene-LOC132636258 |
| Solanaceae | Solanum chilense | 2 | SOLCI004297100, SOLCI004483500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107006965, gene-LOC107026318 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.27753_chr04_-, gene_5938 |
| Tamaricaceae | Tamarix chinensis | 2 | TC02G2286, TC02G3627 |
| Zosteraceae | Zostera marina | 1 | Zosma06g22500.v3.1 |