Basic Information
Locus ID:
CQ.Regalona.r1.2BG0005840
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 8079010 | 8084049 | - | CQ.Regalona.r1.2BG0005840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 34,573.22 Da | 38.64 | 72.82 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03829 | Sina | 171 | 299 | 4.64202E-65 | - |
| CDD | cd16571 | RING-HC_SIAHs | 55 | 93 | 2.2379E-14 | - |
| Pfam | PF03145 | Seven in absentia protein family | 99 | 298 | 1.1E-79 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 110 | 302 | 4.05E-46 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 49 | 97 | 2.94E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 19 | 109 | 4.5E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 165 | 6.1E-17 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 166 | 298 | 2.0E-39 | IPR008974 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 57 | 93 | 9.30263 | IPR001841 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 110 | 170 | 14.11725 | IPR013010 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_021750604.1 | E3 ubiquitin-protein ligase SINAT5-like [Chenopodium quinoa] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803MYC1 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology