Basic Information
Locus ID:
CQ.Regalona.r1.2BG0001100
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2B | 1464195 | 1466032 | - | CQ.Regalona.r1.2BG0001100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.84 | 44,317.16 Da | 39.56 | 87.06 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 204 | 330 | 4.7E-13 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 34 | 108 | 1.1E-5 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 184 | 331 | 1.96E-17 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 28 | 178 | 1.7E-17 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 173 | 331 | 1.2E-10 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 21 | 172 | 3.5E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 58 | 178 | 1.6 | IPR000782 |
| SMART | SM00554 | fasc_3 | 227 | 331 | 5.4E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 188 | 328 | 11.208603 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 22 | 175 | 12.930115 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 396 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_021771391.1 | fasciclin-like arabinogalactan protein 1 [Chenopodium quinoa] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803LQ74 | Fasciclin-like arabinogalactan protein 1 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology