Basic Information
Locus ID:
CQ.Regalona.r1.2AG0021910
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 58139898 | 58141877 | + | CQ.Regalona.r1.2AG0021910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 72,542.74 Da | 41.35 | 117.27 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 277 | 318 | 1.52709E-20 | - |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 403 | 440 | 1.8E-9 | IPR000225 |
| Pfam | PF04564 | U-box domain | 273 | 344 | 1.6E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 373 | 653 | 7.3E-39 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 262 | 347 | 1.9E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 254 | 349 | 5.2E-27 | IPR013083 |
| Gene3D | G3DSA:1.20.930.20 | - | 15 | 123 | 5.2E-5 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 496 | 651 | 7.5E-15 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 375 | 495 | 5.3E-22 | IPR011989 |
| SMART | SM00185 | arm_5 | 401 | 441 | 2.0E-6 | IPR000225 |
| SMART | SM00185 | arm_5 | 526 | 566 | 2.5 | IPR000225 |
| SMART | SM00185 | arm_5 | 442 | 483 | 48.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 485 | 525 | 13.0 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 276 | 339 | 5.0E-26 | IPR003613 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 412 | 454 | 13.3874 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 272 | 346 | 31.20055 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01830.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_021732517.1 | U-box domain-containing protein 1-like [Chenopodium quinoa] | 0 |
| E4NKF8 | U-box domain-containing protein 1 OS=Medicago truncatula OX=3880 GN=PUB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803M3X0 | RING-type E3 ubiquitin transferase OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14251 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_24321 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035351 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg21470, Sbi_jg22346 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16274 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00008862 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl62819, Sgl67435 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000022197, gene:ENSEOMG00000051024 |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.1BG0020130, CQ.Regalona.r1.1BG0020140 ... |
| Apiaceae | Apium graveolens | 2 | Ag8G00005, Ag8G00428 |
| Arecaceae | Cocos nucifera | 1 | scaffold140503G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103722788 |
| Asteraceae | Flaveria trinervia | 1 | Ftri6G08961 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0098 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0109 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1901 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00011778 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.931 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27407 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16811, nbisL1-mrna-7415 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1472 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.225 |
| Salicaceae | Populus euphratica | 2 | populus_peu06578, populus_peu20458 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609025 |
| Solanaceae | Solanum chilense | 1 | SOLCI006082200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107022959 |