Basic Information
Locus ID:
CQ.Regalona.r1.2AG0020380
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 56244172 | 56255672 | - | CQ.Regalona.r1.2AG0020380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 61,974.24 Da | 76.99 | 68.30 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 221 | 262 | 7.00966E-24 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 314 | 425 | 7.0E-40 | IPR010543 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 220 | 261 | 1.0E-9 | - |
| Pfam | PF14369 | zinc-ribbon | 15 | 52 | 2.3E-14 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 268 | 1.9E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 268 | 8.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 221 | 261 | 2.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 221 | 262 | 12.120453 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 90 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 412 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 0 |
| RefSeq | XP_021757285.1 | probable E3 ubiquitin-protein ligase RHC2A [Chenopodium quinoa] | 0 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 0 | |
| TrEMBL | A0A803N542 | DUF1117 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology