Basic Information
Locus ID:
CQ.Regalona.r1.2AG0019400
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 55154079 | 55160049 | + | CQ.Regalona.r1.2AG0019400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.58 | 43,471.07 Da | 45.58 | 82.17 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.15031E-28 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 163 | 212 | 6.87952E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 368 | 403 | 1.1E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.3E-19 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 288 | 343 | 1.4E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 170 | 207 | 1.0E-13 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 349 | 410 | 1.25E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 166 | 221 | 9.05E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 285 | 349 | 5.76E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 1.63E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 4.7E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 361 | 408 | 1.1E-22 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 162 | 212 | 1.5E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 278 | 344 | 7.9E-28 | IPR036353 |
| SMART | SM00165 | uba_6 | 169 | 209 | 5.8E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 368 | 405 | 4.7E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.9E-20 | IPR000626 |
| SMART | SM00727 | CBM | 286 | 329 | 1.3E-4 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 410 | 5.7E-109 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 167 | 210 | 13.004739 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 365 | 406 | 13.703554 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.25955 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 314 | 336 | 9.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 362 | 378 | 9.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 379 | 393 | 9.5E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 394 | 409 | 9.5E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 105 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 88 | 111 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_021763544.1 | ubiquitin receptor RAD23d-like [Chenopodium quinoa] | 0 |
| Q84L30 | Ubiquitin receptor RAD23d OS=Arabidopsis thaliana OX=3702 GN=RAD23D PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LAU3 | Ubiquitin receptor RAD23 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology