Basic Information
Locus ID:
CQ.Regalona.r1.2AG0019370
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 55112250 | 55117842 | + | CQ.Regalona.r1.2AG0019370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 80,494.77 Da | 40.91 | 99.13 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 243 | 279 | 2.2E-4 | IPR001810 |
| Pfam | PF08392 | FAE1/Type III polyketide synthase-like protein | 2 | 232 | 5.8E-98 | IPR013601 |
| SUPERFAMILY | SSF53901 | Thiolase-like | 2 | 164 | 7.33E-38 | IPR016039 |
| SUPERFAMILY | SSF81383 | F-box domain | 240 | 290 | 2.88E-11 | IPR036047 |
| Gene3D | G3DSA:3.40.47.10 | - | 21 | 163 | 2.0E-27 | IPR016039 |
| Gene3D | G3DSA:1.20.1280.50 | - | 229 | 281 | 1.3E-6 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 241 | 277 | 9.153042 | IPR001810 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25450.1 | 3-ketoacyl-CoA synthase 5. Encodes KCS5, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). | 0 |
| RefSeq | XP_021755129.1 | F-box/FBD/LRR-repeat protein At5g56420-like [Chenopodium quinoa] | 0 |
| Q9C6L5 | 3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana OX=3702 GN=KCS5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LAU8 | F-box domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology