Basic Information
Locus ID:
CQ.Regalona.r1.2AG0015160
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 50412219 | 50418197 | + | CQ.Regalona.r1.2AG0015160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 102,410.81 Da | 40.67 | 90.83 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 596 | 870 | 1.36264E-96 | - |
| Pfam | PF13855 | Leucine rich repeat | 381 | 440 | 7.3E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 38 | 71 | 0.0028 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 99 | 156 | 1.8E-9 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 361 | 378 | 0.99 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 594 | 866 | 5.9E-47 | IPR001245 |
| Pfam | PF00560 | Leucine Rich Repeat | 200 | 219 | 0.54 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 564 | 876 | 1.12E-79 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 50 | 447 | 7.91E-49 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 340 | 464 | 1.1E-31 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 36 | 337 | 6.3E-78 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 668 | 888 | 1.4E-57 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 550 | 667 | 2.8E-37 | - |
| SMART | SM00369 | LRR_typ_2 | 120 | 143 | 8.8E-5 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 403 | 426 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 427 | 449 | 32.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 195 | 218 | 210.0 | IPR003591 |
| SMART | SM00220 | serkin_6 | 590 | 871 | 1.9E-43 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 144 | 168 | 84.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 122 | 143 | 7.188307 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 590 | 871 | 40.611942 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 715 | 727 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 596 | 618 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 481 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 944 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 460 | 483 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66150.1 | transmembrane kinase 1. receptor-like transmembrane kinase I (TMK1) | 0 |
| RefSeq | XP_021729205.1 | receptor protein kinase TMK1-like [Chenopodium quinoa] | 0 |
| P43298 | Receptor protein kinase TMK1 OS=Arabidopsis thaliana OX=3702 GN=TMK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803N857 | Protein kinase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology