halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.2AG0014560

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: phosphatase 2A 55 kDa regulatory subunit B

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2A	49537129	49548178	+	CQ.Regalona.r1.2AG0014560

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.13	56,583.64 Da	50.75	66.70	-0.50

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	223	259	0.057	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	44	504	1.68E-34	IPR036322
Gene3D	G3DSA:2.130.10.10	-	84	318	5.4E-16	IPR015943
Gene3D	G3DSA:2.130.10.10	-	319	508	8.2E-8	IPR015943
SMART	SM00320	WD40_4	220	259	0.41	IPR001680
SMART	SM00320	WD40_4	329	367	160.0	IPR001680
SMART	SM00320	WD40_4	36	71	5.0	IPR001680
SMART	SM00320	WD40_4	270	310	11.0	IPR001680
SMART	SM00320	WD40_4	110	150	17.0	IPR001680
PIRSF	PIRSF037309	PPA2_B55	19	512	3.4E-196	IPR000009
ProSitePatterns	PS01025	Protein phosphatase 2A regulatory subunit PR55 signature 2.	229	243	-	IPR018067
ProSitePatterns	PS01024	Protein phosphatase 2A regulatory subunit PR55 signature 1.	110	124	-	IPR018067
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	398	424	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	287	315	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	50	70	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	344	371	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	372	397	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	316	343	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	126	154	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	481	510	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	231	258	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	97	125	2.5E-157	IPR000009
PRINTS	PR00600	Protein phosphatase PP2A 55kDa regulatory subunit signature	259	286	2.5E-157	IPR000009
MobiDBLite	mobidb-lite	consensus disorder prediction	435	476	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)

Cellular Component:

GO:0000159 (protein phosphatase type 2A complex)

KEGG Pathway

KO Term:

K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)

Pathway:

ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)

Best hit

Source	Best Hit ID	Description
TAIR	AT1G17720.2	Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B
RefSeq	XP_021749751.1	serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Chenopodium quinoa]
Swiss-Prot	Q39247	Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1
TrEMBL	A0A0K9RNQ6	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Spinacia oleracea OX=3562 GN=SOVF_045840 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	4	jg13574, jg18075, jg18764, jg25258
Aizoaceae	Mesembryanthemum crystallinum	2	gene_13182, gene_21265
Amaranthaceae	Atriplex hortensis	2	Ah011387, Ah034602
Amaranthaceae	Beta vulgaris	2	BVRB_2g033360, BVRB_9g211380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg11876, Sbi_jg46797
Amaranthaceae	Salicornia europaea	1	Seu_jg21101
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00020959
Amaranthaceae	Suaeda glauca	2	Sgl80203, Sgl82652
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ... gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ... CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae	Pistacia vera	3	pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae	Apium graveolens	5	Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae	Cocos nucifera	5	COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ... COCNU_06G005110, COCNU_14G003240
Arecaceae	Phoenix dactylifera	8	gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ... gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ... AsparagusV1_06.558.V1.1
Asteraceae	Flaveria trinervia	8	Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ... Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae	Arabidopsis thaliana	2	AT1G17720.1, AT1G51690.3
Brassicaceae	Eutrema salsugineum	3	Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ... Thhalv10020527m.g.v1.0
Brassicaceae	Schrenkiella parvula	3	Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae	Brassica nigra	8	BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ... BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae	Casuarina equisetifolia	4	Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae	Casuarina glauca	3	Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae	Cymodocea nodosa	4	gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ... gene.Cymno16g03380
Dunaliellaceae	Dunaliella salina	1	Dusal.0038s00001.v1.0
Hydrocharitaceae	Thalassia testudinum	3	gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae	Hibiscus hamabo Siebold & Zucc.	2	nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae	Nitraria sibirica	3	evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae	Plantago ovata	3	Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae	Limonium bicolor	4	Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae	Echinochloa crus-galli	9	AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ... BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae	Eleusine coracana subsp. coracana	6	gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ... gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae	Hordeum vulgare	3	HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ... HORVU.MOREX.r3.7HG0717590.1
Poaceae	Lolium multiflorum	3	gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae	Oryza coarctata	7	Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ... Oco04G016030, Oco11G011280, Oco12G011400
Poaceae	Oryza sativa	3	LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae	Paspalum vaginatum	3	gene-BS78_03G184700, gene-BS78_04G198300 ... gene-BS78_10G168300
Poaceae	Puccinellia tenuiflora	5	Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ... Pt_Chr0605368
Poaceae	Sporobolus alterniflorus	8	Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ... Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae	Thinopyrum elongatum	3	Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG032040, gene_TRIDC3BG036680 ... gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae	Triticum aestivum	9	TraesCS3A02G214500.2, TraesCS3B02G245100.2 ... TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae	Zea mays	7	Zm00001eb161320_P002, Zm00001eb205080_P004 ... Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae	Zoysia japonica	4	nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ... nbis-gene-9474
Poaceae	Zoysia macrostachya	3	Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae	Portulaca oleracea	6	evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ... evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae	Posidonia oceanica	3	gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.Scaffold_10_RagTag.1347 ... evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae	Carallia pectinifolia	3	nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae	Ceriops tagal	3	nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae	Ceriops zippeliana	3	nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae	Kandelia candel	3	evm.TU.utg000004l.67, evm.TU.utg000010l.123 ... evm.TU.utg000023l.72
Rhizophoraceae	Kandelia obovata	3	Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae	Rhizophora apiculata	3	nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae	Rhizophora mangle	3	nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae	Populus euphratica	6	populus_peu02604, populus_peu04981, populus_peu12674 ... populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae	Lycium barbarum	4	gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ... gene-LOC132645676
Solanaceae	Solanum chilense	4	SOLCI003840200, SOLCI004096800, SOLCI005557600 ... SOLCI007425100
Solanaceae	Solanum pennellii	4	gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ... gene-LOC107023835
Tamaricaceae	Reaumuria soongarica	3	gene_10029, gene_3154, gene_3739
Tamaricaceae	Tamarix chinensis	3	TC01G2513, TC08G1710, TC10G2106
Zosteraceae	Zostera marina	4	Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ... Zosma06g11380.v3.1