Basic Information
Locus ID:
CQ.Regalona.r1.2AG0013980
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 48523893 | 48535015 | + | CQ.Regalona.r1.2AG0013980 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.99 | 138,602.19 Da | 39.94 | 81.19 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 16 | 150 | 5.99074E-52 | - |
| CDD | cd01989 | STK_N | 535 | 635 | 6.94459E-32 | - |
| Pfam | PF00582 | Universal stress protein family | 18 | 140 | 6.7E-8 | IPR006016 |
| Pfam | PF00069 | Protein kinase domain | 921 | 1174 | 4.9E-41 | IPR000719 |
| Pfam | PF07992 | Pyridine nucleotide-disulphide oxidoreductase | 270 | 516 | 1.6E-32 | IPR023753 |
| SUPERFAMILY | SSF51905 | FAD/NAD(P)-binding domain | 285 | 520 | 8.19E-33 | IPR036188 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 901 | 1177 | 1.48E-68 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 18 | 148 | 7.03E-11 | - |
| Gene3D | G3DSA:3.50.50.60 | - | 329 | 461 | 5.3E-74 | IPR036188 |
| Gene3D | G3DSA:3.50.50.60 | - | 291 | 526 | 5.3E-74 | IPR036188 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 991 | 1191 | 9.9E-48 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 887 | 990 | 1.7E-25 | - |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 16 | 150 | 5.1E-11 | IPR014729 |
| SMART | SM00220 | serkin_6 | 918 | 1182 | 5.4E-28 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 918 | 1182 | 34.604992 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1036 | 1048 | - | IPR008271 |
| ProSitePatterns | PS00573 | Pyridine nucleotide-disulphide oxidoreductases class-II active site. | 350 | 372 | - | IPR008255 |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 455 | 476 | 3.8E-46 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 453 | 469 | 8.6E-22 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 364 | 382 | 8.6E-22 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 317 | 335 | 8.6E-22 | - |
| PRINTS | PR00368 | FAD-dependent pyridine nucleotide reductase signature | 480 | 502 | 8.6E-22 | - |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 318 | 326 | 3.8E-46 | - |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 343 | 355 | 3.8E-46 | - |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 412 | 428 | 3.8E-46 | - |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 360 | 384 | 3.8E-46 | - |
| PRINTS | PR00469 | Pyridine nucleotide disulphide reductase class-II signature | 490 | 508 | 3.8E-46 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1209 | 1255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 684 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1200 | 1255 | - | - |
| Coils | Coil | Coil | 851 | 890 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12000.1 | Protein kinase protein with adenine nucleotide alpha hydrolases-like domain. | 0 |
| RefSeq | XP_021763738.1 | U-box domain-containing protein 52-like isoform X2 [Chenopodium quinoa] | 0 |
| Q9FKG6 | U-box domain-containing protein 52 OS=Arabidopsis thaliana OX=3702 GN=PUB52 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LB75 | RRM domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology