Basic Information
Locus ID:
CQ.Regalona.r1.2AG0012510
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 45138740 | 45143243 | - | CQ.Regalona.r1.2AG0012510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 64,746.39 Da | 40.18 | 89.16 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 34 | 130 | 8.9E-10 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 193 | 447 | 8.2E-79 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 22 | 123 | 1.73E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 18 | 140 | 2.0E-14 | IPR011333 |
| SMART | SM00225 | BTB_4 | 38 | 134 | 3.3E-7 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 193 | 472 | 75.662338 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 38 | 106 | 11.295418 | IPR000210 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G30520.1 | Phototropic-responsive NPH3 family protein. light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis | 0 |
| RefSeq | XP_021744158.1 | root phototropism protein 2-like [Chenopodium quinoa] | 0 |
| Q682S0 | Root phototropism protein 2 OS=Arabidopsis thaliana OX=3702 GN=RPT2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A803LZ13 | Root phototropism protein 2 OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16724, jg35705, jg38066 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_23353, gene_7996 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah034154, Ah034155 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g109820 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg20660, Sbi_jg20662, Sbi_jg23092 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg16955, Seu_jg16956 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009227 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63407, Sgl67886 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000017916, gene:ENSEOMG00000018283 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0012510, CQ.Regalona.r1.2BG0014150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30131750 |
| Apiaceae | Apium graveolens | 1 | Ag2G01241 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G004790 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716684 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.1526.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G22113, Ftri9G33387 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G30520.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016728m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g13070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g019570.2N, BniB08g019010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2461 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G2700, Cgl08G2703 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g11760 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g29700 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.522, evm.TU.LG01.523 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025533 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16590 |
| Poaceae | Echinochloa crus-galli | 8 | AH04.93, AH05.23, AH05.3672, BH02.2753, BH04.100, BH05.46 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672670, gene-QOZ80_9BG0696280 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.4HG0353070.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_065064 |
| Poaceae | Oryza coarctata | 2 | Oco23G000130, Oco23G000610 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g02610.1, LOC_Os12g02530.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G017000, gene-BS78_08G017000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0103781 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr07G016170, Chr31G006700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel4E01G194100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC4AG030820, gene_TRIDC4BG019030 |
| Poaceae | Triticum aestivum | 3 | TraesCS4A02G192900.1, TraesCS4B02G122300.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb093890_P001, Zm00001eb405820_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25786 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24643 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.144, evm.TU.LG15.20 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27230 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.704 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-24875 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-3355, nbisL1-mrna-3356 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-19110, nbisL1-mrna-19111 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.144 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016199 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-146 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-10403 |
| Salicaceae | Populus euphratica | 2 | populus_peu14523, populus_peu17030 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132643960 |
| Solanaceae | Solanum chilense | 1 | SOLCI006183900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026001 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.32235_chr09_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1399 |
| Zosteraceae | Zostera marina | 1 | Zosma02g17390.v3.1 |