Basic Information
Locus ID:
CQ.Regalona.r1.2AG0006750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 11700152 | 11703894 | + | CQ.Regalona.r1.2AG0006750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 69,201.19 Da | 36.99 | 89.02 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 25 | 114 | 1.7E-8 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 211 | 477 | 8.2E-89 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 18 | 115 | 9.42E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 8 | 160 | 3.2E-12 | IPR011333 |
| SMART | SM00225 | BTB_4 | 28 | 122 | 2.1E-4 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 211 | 501 | 89.739586 | IPR027356 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 98 | 11.564283 | IPR000210 |
| Coils | Coil | Coil | 537 | 564 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G03250.1 | Phototropic-responsive NPH3 family protein. | 0 |
| RefSeq | XP_021770684.1 | BTB/POZ domain-containing protein At5g03250-like [Chenopodium quinoa] | 0 |
| Q9LYW0 | BTB/POZ domain-containing protein At5g03250 OS=Arabidopsis thaliana OX=3702 GN=At5g03250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A803LSD0 | BTB/POZ domain-containing protein At5g03250-like OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology