Basic Information
Locus ID:
CQ.Regalona.r1.2AG0005750
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
RNA polymerase II-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 8825895 | 8830074 | - | CQ.Regalona.r1.2AG0005750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 42,503.25 Da | 36.70 | 77.97 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07762 | Protein of unknown function (DUF1618) | 69 | 182 | 9.6E-7 | IPR011676 |
| SUPERFAMILY | SSF48452 | TPR-like | 242 | 351 | 1.03E-24 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 238 | 339 | 1.1E-28 | IPR011990 |
| SMART | SM00028 | tpr_5 | 308 | 341 | 1.9 | IPR019734 |
| SMART | SM00028 | tpr_5 | 276 | 307 | 0.97 | IPR019734 |
| SMART | SM00028 | tpr_5 | 241 | 274 | 0.066 | IPR019734 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56440.2 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_021762273.1 | uncharacterized protein LOC110727047 [Chenopodium quinoa] | 0 |
| Q9D706 | RNA polymerase II-associated protein 3 OS=Mus musculus OX=10090 GN=Rpap3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803ML08 | TPR_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology