Basic Information
Locus ID:
CQ.Regalona.r1.2AG0005600
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 8576082 | 8589205 | - | CQ.Regalona.r1.2AG0005600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.12 | 54,647.14 Da | 38.80 | 79.10 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 192 | 0.0037 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 195 | 237 | 4.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 252 | 286 | 0.088 | IPR001680 |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 73 | 2.62E-10 | IPR036047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 127 | 460 | 1.5E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 120 | 295 | 4.1E-25 | IPR015943 |
| Gene3D | G3DSA:1.20.1280.50 | - | 3 | 92 | 8.8E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 311 | 495 | 1.2E-12 | IPR015943 |
| SMART | SM00320 | WD40_4 | 194 | 237 | 2.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 380 | 418 | 0.29 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 286 | 0.0014 | IPR001680 |
| SMART | SM00320 | WD40_4 | 141 | 193 | 2.6E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 201 | 240 | 9.806668 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 295 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 253 | 286 | 8.729241 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 387 | 427 | 9.138305 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 405 | 419 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 180 | 194 | 7.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 224 | 238 | 7.4E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 273 | 287 | 7.4E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.4 | - | 0 |
| RefSeq | XP_021762285.1 | probable E3 ubiquitin ligase complex SCF subunit sconB [Chenopodium quinoa] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803ML24 | WD_REPEATS_REGION domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg17857 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_20200 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032643 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29793, Sbi_jg43303 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18584 |
| Amaranthaceae | Suaeda aralocaspica | 3 | GOSA_00004333, GOSA_00004335, GOSA_00004336 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66384, Sgl70719 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000013571, gene:ENSEOMG00000020749 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.2AG0005600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30195110 |
| Apiaceae | Apium graveolens | 1 | Ag9G00507 |
| Arecaceae | Cocos nucifera | 1 | scaffold016592G000050 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103721330 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2255.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G01721 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1734 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1786 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g00840 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g14100 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.155, evm.TU.LG02.2388 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02253 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.367, BH02.392, CH02.435 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0012600, gene-QOZ80_1BG0061250 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0237370.1 |
| Poaceae | Oryza coarctata | 2 | Oco01G003670, Oco02G003720 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g09020.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G035600 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200036, Pt_Chr0200042 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr03G006050, Chr08G006490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G192400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG013750, gene_TRIDC3BG018230 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G111300.1, TraesCS3B02G130100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb121640_P003, Zm00001eb204740_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6754 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10096 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.1149, evm.TU.LG25.210 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g10640 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.257 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15097 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-211 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007287 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-11811 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17361 |
| Salicaceae | Populus euphratica | 2 | populus_peu24477, populus_peu24484 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132623117 |
| Solanaceae | Solanum chilense | 1 | SOLCI000207600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012054 |