Basic Information
Locus ID:
CQ.Regalona.r1.2AG0005350
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Autophagy-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2A | 8007516 | 8013668 | + | CQ.Regalona.r1.2AG0005350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 46,152.63 Da | 46.99 | 81.62 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 40 | 291 | 2.02E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 394 | 3.4E-17 | IPR015943 |
| SMART | SM00320 | WD40_4 | 124 | 159 | 490.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 206 | 246 | 0.09 | IPR001680 |
| SMART | SM00320 | WD40_4 | 249 | 290 | 0.13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 25 | 72 | 130.0 | IPR001680 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 390 | 402 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56440.1 | homolog of yeast autophagy 18 (ATG18) D. | 0 |
| RefSeq | XP_021762313.1 | autophagy-related protein 18d-like isoform X1 [Chenopodium quinoa] | 0 |
| Q0WPK3 | Autophagy-related protein 18d OS=Arabidopsis thaliana OX=3702 GN=ATG18D PE=2 SV=1 | 0 | |
| TrEMBL | A0A803ML50 | Autophagy-related protein 18d OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology