halophFGD

Basic Information

Locus ID: CQ.Regalona.r1.2AG0001890

Species & Taxonomic ID: Chenopodium quinoa & 63459

Genome Assembly: GCA_040571445.1

Description: RING-type E3 ubiquitin transferase

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr2A	2520176	2528034	+	CQ.Regalona.r1.2AG0001890

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.52	91,835.47 Da	50.68	90.78	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16664	RING-Ubox_PUB	243	285	1.73786E-24	-
Pfam	PF00514	Armadillo/beta-catenin-like repeat	585	622	1.3E-9	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	667	704	9.7E-6	IPR000225
Pfam	PF00514	Armadillo/beta-catenin-like repeat	624	663	2.4E-4	IPR000225
Pfam	PF04564	U-box domain	239	308	5.1E-21	IPR003613
SUPERFAMILY	SSF48371	ARM repeat	551	826	1.15E-48	IPR016024
SUPERFAMILY	SSF57850	RING/U-box	228	316	9.08E-29	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	238	312	3.5E-26	IPR013083
Gene3D	G3DSA:1.25.10.10	-	693	835	9.7E-24	IPR011989
Gene3D	G3DSA:1.25.10.10	-	534	688	6.6E-35	IPR011989
SMART	SM00504	Ubox_2	242	305	2.1E-32	IPR003613
SMART	SM00185	arm_5	583	623	9.9E-7	IPR000225
SMART	SM00185	arm_5	706	745	0.0047	IPR000225
SMART	SM00185	arm_5	746	786	2.0	IPR000225
SMART	SM00185	arm_5	624	664	0.11	IPR000225
SMART	SM00185	arm_5	665	705	1.7	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	717	758	10.5174	IPR000225
ProSiteProfiles	PS51698	U-box domain profile.	238	312	41.443871	IPR003613
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	594	636	12.4074	IPR000225
ProSiteProfiles	PS50176	Armadillo/plakoglobin ARM repeat profile.	676	718	10.5174	IPR000225
MobiDBLite	mobidb-lite	consensus disorder prediction	362	391	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	469	515	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	499	514	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	469	484	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	406	432	-	-
Coils	Coil	Coil	182	212	-	-

Gene Ontology

Biological Process:

GO:0016567 (protein ubiquitination)

Molecular Function:

GO:0004842 (ubiquitin-protein transferase activity) GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K08332 (vacuolar protein 8)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23140.2	RING/U-box superfamily protein with ARM repeat domain.
RefSeq	XP_021746257.1	U-box domain-containing protein 4-like [Chenopodium quinoa]
Swiss-Prot	O22193	U-box domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=PUB4 PE=1 SV=3
TrEMBL	A0A0K9R2X2	RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_112210 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg4700, jg4701
Aizoaceae	Mesembryanthemum crystallinum	2	gene_23981, gene_25145
Amaranthaceae	Atriplex hortensis	1	Ah031925
Amaranthaceae	Beta vulgaris	3	BVRB_2g043480, BVRB_2g043510, BVRB_6g127640
Amaranthaceae	Salicornia bigelovii	5	Sbi_jg13104, Sbi_jg30282, Sbi_jg43700, Sbi_jg51997 ... Sbi_jg52745
Amaranthaceae	Salicornia europaea	3	Seu_jg18207, Seu_jg9099, Seu_jg9860
Amaranthaceae	Suaeda aralocaspica	2	GOSA_00010153, GOSA_00023210
Amaranthaceae	Suaeda glauca	5	Sgl33857, Sgl39230, Sgl65815, Sgl65847, Sgl70157
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000003241, gene:ENSEOMG00000013691 ... gene:ENSEOMG00000020408, gene:ENSEOMG00000021932, gene:ENSEOMG00000028225, gene:ENSEOMG00000048074
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0001890, CQ.Regalona.r1.2BG0002930 ... CQ.Regalona.r1.6AG0025690, CQ.Regalona.r1.6BG0027230
Anacardiaceae	Pistacia vera	1	pistato.v30205470
Apiaceae	Apium graveolens	2	Ag10G01048, Ag5G00312
Arecaceae	Cocos nucifera	4	COCNU_09G009970, COCNU_10G009950, COCNU_10G009960 ... scaffold006710G000020
Arecaceae	Phoenix dactylifera	2	gene-LOC103716639, gene-LOC103720451
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.3469.V1.1
Asteraceae	Flaveria trinervia	4	Ftri17G13639, Ftri18G27750, Ftri1G22182, Ftri6G20170
Brassicaceae	Arabidopsis thaliana	2	AT2G23140.1, AT5G67340.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10000047m.g.v1.0, Thhalv10003745m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g29320.v2.2, Sp4g02200.v2.2
Brassicaceae	Brassica nigra	4	BniB01g020620.2N, BniB02g020030.2N, BniB06g014510.2N ... BniB07g043720.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq05G1384
Casuarinaceae	Casuarina glauca	1	Cgl05G1385
Cymodoceaceae	Cymodocea nodosa	2	gene.Cymno11g11290, gene.Cymno11g11310
Hydrocharitaceae	Thalassia testudinum	6	gene.Thate05g03190, gene.Thate05g03210, gene.Thate05g03280 ... gene.Thate05g03300, gene.Thate06g20280, gene.Thate07g01620
Malvaceae	Hibiscus hamabo Siebold & Zucc.	4	nbisL1-mrna-10061, nbisL1-mrna-10549, nbisL1-mrna-10550 ... nbisL1-mrna-6656
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG02.945
Plantaginaceae	Plantago ovata	1	Pov_00003835
Plumbaginaceae	Limonium bicolor	2	Lb1G05542, Lb2G08468
Poaceae	Echinochloa crus-galli	6	AH02.4102, AH08.90, BH02.4117, BH08.39, CH02.4148, CH08.159
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_8AG0614970, gene-QOZ80_8BG0642450
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.3HG0297900.1, HORVU.MOREX.r3.3HG0327220.1
Poaceae	Lolium multiflorum	1	gene-QYE76_057192
Poaceae	Oryza coarctata	3	Oco02G027740, Oco15G000510, Oco16G000650
Poaceae	Oryza sativa	2	LOC_Os01g66130.1, LOC_Os08g01900.1
Poaceae	Paspalum vaginatum	2	gene-BS78_03G359600, gene-BS78_07G013600
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0600380, Pt_Chr0700676, Pt_Chr0700704
Poaceae	Sporobolus alterniflorus	4	Chr03G021530, Chr08G020670, Chr16G000010, Chr20G013580
Poaceae	Thinopyrum elongatum	4	Tel3E01G618300, Tel3E01G651500, Tel3E01G878100 ... Tel3E01G878200
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG055610, gene_TRIDC3AG058350 ... gene_TRIDC3AG073760, gene_TRIDC3BG062280, gene_TRIDC3BG085450
Poaceae	Triticum aestivum	7	TraesCS3A02G390200.1, TraesCS3A02G521300.1 ... TraesCS3B02G422200.1, TraesCS3B02G443200.1, TraesCS3B02G591000.1, TraesCS3D02G382500.1, TraesCS3D02G527900.1
Poaceae	Zea mays	3	Zm00001eb145570_P001, Zm00001eb174100_P001 ... Zm00001eb260470_P006
Poaceae	Zoysia japonica	3	nbis-gene-11168, nbis-gene-41408, nbis-gene-51935
Poaceae	Zoysia macrostachya	3	Zma_g22360, Zma_g23507, Zma_g9143
Portulacaceae	Portulaca oleracea	4	evm.TU.LG10.869, evm.TU.LG18.381, evm.TU.LG25.1223 ... evm.TU.LG26.656
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g06870, gene.Posoc08g08720
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_6_RagTag.1819
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17331
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2336
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-11949
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000011l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00007880
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15470
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-3267
Salicaceae	Populus euphratica	5	populus_peu14468, populus_peu14478, populus_peu23323 ... populus_peu32433, populus_peu32867
Solanaceae	Lycium barbarum	3	gene-LOC132601989, gene-LOC132604584, gene-LOC132626552
Solanaceae	Solanum chilense	3	SOLCI005329600, SOLCI005442400, SOLCI006710000
Solanaceae	Solanum pennellii	2	gene-LOC107007682, gene-LOC107008077
Tamaricaceae	Reaumuria soongarica	1	STRG.4815_chr03_-
Tamaricaceae	Tamarix chinensis	1	TC04G1828
Zosteraceae	Zostera marina	1	Zosma01g09780.v3.1