Basic Information
Locus ID:
CQ.Regalona.r1.1BG0021500
Species & Taxonomic ID:
Chenopodium quinoa & 63459
Genome Assembly:
GCA_040571445.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1B | 77744000 | 77761128 | + | CQ.Regalona.r1.1BG0021500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 63,922.59 Da | 32.06 | 105.15 | -0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 366 | 1.92022E-25 | - |
| CDD | cd00030 | C2 | 442 | 538 | 7.41617E-27 | - |
| Pfam | PF00168 | C2 domain | 262 | 366 | 3.3E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 69 | 248 | 6.6E-16 | IPR039010 |
| Pfam | PF00168 | C2 domain | 440 | 532 | 8.0E-26 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 1.85E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 438 | 559 | 2.99E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 258 | 401 | 9.9E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 421 | 558 | 1.3E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 363 | 2.9E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 441 | 539 | 8.7E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 421 | 540 | 21.408024 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 67 | 249 | 30.205578 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 243 | 364 | 20.882498 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 483 | 496 | 1.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 457 | 469 | 1.1E-7 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 505 | 513 | 1.1E-7 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_021769371.1 | synaptotagmin-5-like isoform X1 [Chenopodium quinoa] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RI35 | Synaptotagmin-5 (Fragment) OS=Spinacia oleracea OX=3562 GN=SOVF_064340 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology